SBML
SBML (the Systems Biology Markup Language) is an XML-based format for communicating and storing representations of biological processes. Its aim is to be a lingua franca for representing models in biology. SBML is suitable for models commonly found in research on a number of topics, including cell signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others.
Here are 139 public repositories matching this topic...
The biological network mining workflow identifies frequent structural patterns in biochemical reaction networks encoded in the Systems Biology Markup Language (SBML)
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Jan 6, 2018 - Shell
An interactive web application for gradient matching methods.
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Mar 7, 2018 - R
A graphical editor for systems biology models.
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May 9, 2018 - Java
libSBNW is a network viewer which supports autolayout of reaction networks and uses libSBML for reading/writing models.
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May 16, 2018 - C++
Translation between CellDesigner-flavoured SBML and SBGN-ML
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Nov 17, 2018 - Java
SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also …
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Feb 14, 2019 - TeX
JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
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Aug 19, 2019 - Java
A convenient library that greatly simplifies application development with Java™
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Aug 28, 2019 - Java
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
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Dec 7, 2019 - Python
LibSBMLSim: A library for simulating SBML models (Version 2)
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Jan 24, 2020 - HTML