Spatial bio-chemical reaction model editor and simulator
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Updated
May 29, 2024 - C++
Spatial bio-chemical reaction model editor and simulator
This repository contains all changes made to the strain specific models of Corynebacterium striatum.
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
COBRApy is a package for constraint-based modeling of metabolic networks.
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems
Python package and workflow for EFM calculation via (mp)lrs and efmtool
A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.
Interface between the Systems Biology Markup Language and Julia
Easily use the memote command line interface from a docker container.
Python package for managing systems and subsystems of SBML models
Final Infobiotics Workbench implementation of SBOL and SBML conversion functionality, UI updates, and sequence fetching
A graphical editor for systems biology models.
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