sbml-model
Here are 17 public repositories matching this topic...
This repository contains all changes made to the strain specific models of Corynebacterium striatum.
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May 22, 2024 - HTML
Python package for managing systems and subsystems of SBML models
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Oct 23, 2020 - Jupyter Notebook
A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.
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Mar 7, 2022 - Python
Final Infobiotics Workbench implementation of SBOL and SBML conversion functionality, UI updates, and sequence fetching
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Sep 20, 2018 - Java
A graphical editor for systems biology models.
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May 9, 2018 - Java
Interface between the Systems Biology Markup Language and Julia
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Sep 1, 2021 - Julia
sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems
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Apr 19, 2023 - Python
Easily use the memote command line interface from a docker container.
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Nov 21, 2023 - Shell
Python package and workflow for EFM calculation via (mp)lrs and efmtool
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Nov 9, 2022 - Python
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
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Mar 20, 2024 - Jupyter Notebook
Spatial bio-chemical reaction model editor and simulator
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May 29, 2024 - C++
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
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Jul 7, 2023 - HTML
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
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May 30, 2024
COBRApy is a package for constraint-based modeling of metabolic networks.
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Apr 8, 2024 - Python
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