Architecture of Large Projects in Bioinformatics (University project)
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Updated
Jan 21, 2017 - Python
Architecture of Large Projects in Bioinformatics (University project)
Assemble2 allows you to design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
Visualising RNA-RNA interactions
Extension for creating visualizations of distance restraints in PyRy3D Chimera Extension
Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.
Split and decompose structural RNA multiple sequence alignments
🧬 Taller de Decodificación de ARN con Python
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
GTfold is a fast, scalable multicore code for predicting RNA secondary structure and is one to two orders of magnitude faster than the de facto standard programs and achieves comparable accuracy of prediction.
A platform to do RNA science
Final Project : Algorithms and Object-Oriented programming. Secodary structure of ARN molecules
Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.
Data cleaning and analysis of LASLO results
Code related to TIsigner manuscript and webserver
R4RNA visualisation package. Designed for visualization of RNA-RNA interactions and Genomic information from HiC data.
LaRA 2: Lagrangian Relaxed structural Alignment
JavaFX widgets to visualize and manipulate RNA structures.
A JavaFX app to visualize RNA alignments from Rfam database.
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