Python library to access Gene Expression Omnibus Database (GEO)

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

A pipeline to assess the quantification of transcripts.

Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms

DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing

An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads

RNA-Seq data analysis: whole transcriptome, stranded, dUTP method

Constructing Neoantigen Vaccine Pipeline with pVACtools

QUAlity control for RNA_Seq, a nextflow pipeline

As part of an overall strategy for improving therapies for childhood cancers, the PPTC seeks to develop models for the types of tumors that will be encountered in early phase clinical testing by establishing patient derived xenografts (PDXs) from high-risk childhood cancers refractory to current standard of care treatments. Genomic profiling of …

discovering novel biomarkers in RNA-Seq data with tree-based models and survival analysis

Ontology of RNA Sequencing

A comprehensive pipeline for RNAseq data analysis

Various functions to inspect, extract, and visualise long-read RNA-seq data.

Annotation and Analysis of Deep Sequencing Variants from CirSeq

Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.

Python based script which enables you to translate DNA or RNA, targeted towards high school biology. U=A G=C and exc.

Analysis of RNA decay data set