Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
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Updated
Jun 4, 2021 - Python
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
GREIN : GEO RNA-seq Experiments Interactive Navigator
SNP-free RNA editing Identification Toolkit
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
RNA sequencing analysis software
Automatic RNA-Seq Pipelines with Interactive Report
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
GEO RNA-seq Experiments Processing Pipeline
Automatic Packaging and Distribution of Bioinformatics Pipelines
All-in-one analysis pipeline
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Roddy RNA-seq Workflow Plugin
Materials for "Teaching Bioinformatics and R for dataviz course" June-August 2019 in Majorbio
Girirajan Lab RNA-seq analysis pipeline
miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs
Analysis of mutations at codon 625 of SF3B1 gene in uveal melanoma
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
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