Pipeline for low-level RNA-Seq data processing
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Updated
Oct 4, 2016 - R
Pipeline for low-level RNA-Seq data processing
Automatic Packaging and Distribution of Bioinformatics Pipelines
Classification of RNA-Seq samples using circRNA expression
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.
A snakemake RNAseq pipeline using kalisto. Adapted from https://github.com/crazyhottommy/RNA-seq-analysis/tree/master/RNA-seq-snakemake-pipeline
De nove assembly and annotation of Fragilaria radians transcriptome
GREIN : GEO RNA-seq Experiments Interactive Navigator
Lightweight RNA-seq pipeline to go from fastqs to differential expression using kallisto and sleuth
An RNASeq snakemake workflow using the Tuxedo suite.
RNA-Seq Analysis pipeline using Snakemake workflow
Viper is a Snakemake workflow, aimed at performing the RNA-seq workflow of the paper 'Causes and consequences of a glutamine induced normoxic HIF1 activity for the tumor metabolism', Kappler et al. (2019) in a reproducible and automated manner
Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.
The power of the R's differential gene expression analysis packages, with no programming required.
GEO RNA-seq Experiments Processing Pipeline
Source code of the paper entitled "The sequential data of differential transcription expression of heart in aldosterone-infusion mice"
QUAlity control for RNA_Seq, a nextflow pipeline
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