Performing RNA-seq data analysis with DESeq2 package of bioconductor
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Updated
Feb 27, 2023 - R
Performing RNA-seq data analysis with DESeq2 package of bioconductor
Build highly accurate transcripts from long-read RNA data
eproduciton of a publication regarding gene expression in different phases of lactation in humans
Perform RNA-seq data analysis with edgeR package of bioconductor
Predicting NCSU Coastal Breeding Values using RNA Seq data
This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.
Useful R functions for Multi-omics analyses
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
Sample Data for MMAPPR2
Website (.NET Core MVC architecture) for the RytenLab team (https://rytenlab.com/). It also contains the specification for the .NET Core REST API of the RytenLab Team (https://rytenlab.com/swagger/index.html).
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
A repository for RNA-seq workflow
A repository for code that generates various simulated data.
RNA-Seq tutorial materials - slides, training data, code lines
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
R package to create heatmaps using signature gene list and transcriptomic data
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
M5NRv2 -- non-redundant protein and rRNA database integration
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