📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
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Updated
May 24, 2024 - Python
📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
NLP framework in python for entity recognition and relationship extraction
A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons
A framework for keeping biomedical text mining result up-to-date
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
Open Access PDF harvester
MediaWiki bot to upload content to Wikimedia projects and update corresponding citations on Wikipedia.
A pipeline for inferring gender for acknowledged individuals in scientific literature on a massive scale
Citation.js plugin to output QuickStatements
Repository of our paper on Self-citation analysis in PubMed data
The aim of this project is to use the text from biomedical and life science literature to gain insights on research topic trends over time.
Biomolecular events mined by Reach from PubMed Central
A library that facilitates the process of building a machine learning pipeline using PubMed as a data source
ScrapeMed: Data scraping for PubMed Central.
This is an upgraded version of the original snorkeling project.
PubMed Central browser
Batch downloads full-text PDFs (or any other soruces) from PubmedCentral OA articles
Provides link of the full-text article upon giving PubMed's PMID
Add a description, image, and links to the pubmed-central topic page so that developers can more easily learn about it.
To associate your repository with the pubmed-central topic, visit your repo's landing page and select "manage topics."