Source code and data for fast folding reduction algorithm
-
Updated
Aug 30, 2020 - Fortran
Source code and data for fast folding reduction algorithm
Exploring Uniform Random Sampling in HP Model Protein Folding
Protein folding is the physical process by which a protein chain attains its functional three-dimensional structure from a simple sequence of amino acids.
Classifying protein binding sites from the Cyclica dataset. Built for the CxC 2023 Datathon
- The goal was to calculate the maximum possible energy that emerges during protein folding after each generation - I used Genetic Algorithm and Java to do the project
A streamlit app extending the capabilities of the Jasco spectra manager for fluorescence-spectroscopy protein analytics
Implementation of the HP protein folding model with commands line interface
This is a repo for the "Monte Carlo Simulations of Protein Folding" project. This project is my final project in the computational physics course at Brown University, taken in spring 2018.
Summary of my work to model protein folding as graph (SCN) formation
A curated list of FREE courses available online from top universities of the world on Computational Biology and Bioinformatics.
Protein folding on VKGL data using FoldX and AlphaFold2
sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.
A Monte-Carlo Code: Sequential Importance Sampling with Pilot-Exploration Resampling (SISPER) Applied to a 2D Protein Folding
Code used for our paper, Variable Regions of p53 Isoforms Allosterically Hard Code DNA Interaction
Python library for implementing geometrical representations of curves.
AlphaMod's official repository for protein folding
The working repository for my bachelor thesis with title : "LOGDQN DEEP REINFORCEMENT LEARNING IMPLEMENTATION FOR SOLVING HYDROPHOBIC-POLAR MODEL PROTEIN FOLDING PROBLEM (Tendean et al, 2020)"
Add a description, image, and links to the protein-folding topic page so that developers can more easily learn about it.
To associate your repository with the protein-folding topic, visit your repo's landing page and select "manage topics."