GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
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Updated
Dec 11, 2020 - C
GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records
Repository for accumulating the complete pipeline of phylogenetic studies
Tool for estimating the Felsenstein bootstrap support of phylogenetic trees
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
Lab module and lectures for identifying phylogenetic history of SARS variants using R
An R package to prepare data for phylogenetic analysis
Github repository for "Sequential trait evolution did not drive deep-time diversification in sharks" article, published in Evolution
A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.
Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.
Genomic Epidemiology of SARS-CoV-2 in Pakistan
A Modular and Web-Based Tool for Phylogenetic Analysis
Morphy releases are archived here. This project serves as the root folder for all of the source projects in Morphy.
Code of the article that describes the molecular epidemiology analyses of OsHV-1 virus by whole genome sequencing approaches in French shellfish growing areas.
COEDL Summer School 2019 - Language Phylogenies Tutorial
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
Phylogenetic Inference and Data Visualization for Sequence-Based Typing Methods
A Framework for Large Scale Phylogenetic Analysis
LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
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