Automated pipeline for amplicon sequence analysis
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Updated
May 15, 2024 - Python
Automated pipeline for amplicon sequence analysis
Creates a simple OTU table from Kraken2 report.
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
Functions and workflows for the analysis of microbiome data.
microbiome analysis of ant colonies
Silva OTU count table merger
DGRPy is a python package for DGRP microbiome data analysis
Next Generation Phylogenetic Microbiome Analysis Framework
Repository for the Exam project of group 12 in the course "R for bio datascience".
This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.
normalizing metagenomics abundances based on OTU abundances.
microbiome analysis of ant colonies
Former version of METAPIPE
Multidimensional Scaling for OTU abundance tables and implementation to ggplot
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