Human brain organoids connected to silicon computers
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Updated
Oct 31, 2023
Human brain organoids connected to silicon computers
This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1
Bacterial colonies attaching themselves to human brain organoids, as a neural link to a silicon computer
Organoid Analyzing Tools (OAT) is a package that allow you to analyze organoids dynamics.
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
Involvement of Extracellular Vesicle-derived miRNA clusters in Developing Healthy and Rett Syndrome Brain Organoids
Deterministic evolution and stringent selection during pre-neoplasia
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data
VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
Granular Functional Filtering (Gruffi) to isolate stressed cells
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Organoid Localization and Quantification Using Deep Convolutional Neural Networks
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