A workflow for gaining statistical insight via differential network analysis of microarray data
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Updated
Oct 14, 2017 - R
A workflow for gaining statistical insight via differential network analysis of microarray data
models and main code to reproduce the results of the research articule "single molecule switches and oscillators"
Conversion of BEL to Agent Based Models
Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
A Bio2BEL package for converting BMKS-react to BEL
A repository of the python code created for my undergraduate research project.
A machine learning tool to assign edges in protein-protein interaction networks with a function.
Codes and examples that are explored in the paper "Optimal strategy for determining flow-rates of ecosystem2models (at steady-state)." To be submitted Fall 2018
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
A Bio2BEL package for converting InterPro to BEL
A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL
Streaming over networks
Connecting nodes
A Bio2BEL package for converting ExPASy to BEL
LaTeX source for "Bio2BEL: Integration of Structured Knowledge with Biological Expression Language"
A PyBEL extension for interconversion with CX
A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
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