⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling
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Updated
Feb 21, 2023 - R
⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling
How to set up and run the Miniasm assembler.
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
A tool for Nanopore Amplicon Real-Time (NART) analysis.
VIral GEnome ASsembly pipelines for WGS
Official implementation of paper "Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Nanopore Readouts" (Nano Letters)
Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater
Identify and characterize repeat expansions in long read data
#NoJobTooSmall Contract / ForHire job shop for laboratory tool building / developmental work in the nanoscale realm as well as nanofabrication mfg engineering
Code for STORK. Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care. “Copyright © 2022 The Trustees of Columbia University in the City of New York. All Rights Reserved.”
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
Graph Convolution based model for de novo identification of nucleotide modifications
This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.
A repository to benchmark and automate genome assembly evaluation. Utilize scripts for Dragonflye with diverse polishing models on Illumina and Nanopore reads to fine-tune genome assemblies
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