An open-source library of algorithms to analyse time series in GPU and CPU.
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Updated
Sep 3, 2021 - C++
An open-source library of algorithms to analyse time series in GPU and CPU.
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
A performant, powerful query framework to search for network motifs
Ember Communication Patterns
Motiflets
Source code for KAIS (2023) paper "Temporal Hypergraph Motifs" and ICDM 2021 paper "THyMe+: Temporal Hypergraph Motifs and Fast Algorithms for Exact Counting."
Python bindings for the TFM-Pvalue program.
Source code for VLDB 2020 paper "Hypergraph Motifs: Concepts, Algorithms, and Discoveries."
This application searches inside a text sequence for words that resemble those inside a list of similar words.
Local Motif Clustering on Time-Evolving Graphs, KDD 2020
Python (3.8+) implementation of structural similarity and complementarity coefficients for undirected (un)weighted networks based on efficient counting of 2- and 3-paths (triples and quadruples) and 3- and 4-cycles (triangles and quadrangles).
modified exact discovery of time series motifs
DYnamic MOtif-NoDes (DYMOND) is a dynamic network generative model based on temporal motifs and node behavior.
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Benchmarks collection for GRECO TFBS Benchmarking Initiative
To reproduce analysis and methods presented in Bell and Paegle (2021)
Motifs search and discovery in Pyrococcus Furiosus genome using MEME software (Physical Methods of Biology exam).
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