Python code that I used in my blog posts on the Zarr file format.
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Updated
Oct 24, 2022 - Python
Python code that I used in my blog posts on the Zarr file format.
napari within the mikro environment
Quantify the colonization behaviours on surfaces for different bacterial strains
convolutional-relational neural network architectures for segmentation of electron micrographs
This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
4DN-BINA-OME-QUAREP Microscopy Glossary
Repository for an automated microscopy image analysis pipeline, using ImageJ.
Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO
This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client
Nuclear Morphology and Chromatin Organization Features
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.
This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
Scientific software for analysis of confluent cell dynamics.
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