COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
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Updated
May 27, 2024 - R
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Python package to study microbial communities using metabolic modeling.
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
The consensus GEM for Saccharomyces cerevisiae
A Universal Modeling Language for Metabolic Flux Analysis
Estimation of extracellular fluxes and growth rate
🗺️ A repository of CNApy projects
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
COBRApy is a package for constraint-based modeling of metabolic networks.
From annotated genomes to metabolic screening in large scale microbiotas
Minimal Supplying Community Search with constraint-based optimization methods.
ScyNet: Visualisation of community metabolic models in Cytoscape
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Repository of tutorials for The COBRA Toolbox
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