The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
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Updated
May 27, 2024 - MATLAB
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
A Universal Modeling Language for Metabolic Flux Analysis
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
Reinforcement Learning based bioretrosynthesis tool
Library to perform metabolic engineering tasks
Suite of tools that work on rpSBML format
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Python wrapper for Retropath2.0 Knime workflow
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models
This repository is used in relation with the Python package teemi for constructing microbial strains to de-bottleneck the strictosidine pathway.
A jupyter hub docker app for metabolic modelling using mewpy, troppo, cobra, etfl and cplex.
An exploration of using FBA to engineer E. coli's metabolism in Julia
CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks
DNA微分催化与肽计算, 元基花计算,进化计算,遗传计算,智慧计算,索引计算,元基编码,肽展公式,大数据计算分析, 数据加密
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
Genome-scale model of Yarrowia lipolytica.
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