3MC - African Mathematical School on Mathematical Modeling in Biology
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Updated
Apr 4, 2023 - R
3MC - African Mathematical School on Mathematical Modeling in Biology
Individual-based implementation of Fisher's geometric model with evolvable phenotypic noise.
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.
Code to simulate local calcium dynamics in ER-PM junctions during store operated calcium entry. This MATLAB code was used to make the figures presented at FASEB Calcium and Cell Function, Lake Tahoe 2018
The codes of Drylab Team, iGEM ITB 2017 to support the wetlab.
Predator Only Lotka–Volterra Model
Moises curriculum, teaching experience and research interests.
Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.
Code base for honours thesis
Mathematical Models of Quorum Sensing
Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.
R code for Allman And Rhodes' book "Mathematical Models in Biology: An Introduction"
Computational models for epithelial transport along the nephron.
code to infer model parameters from data (first dedicated to the dynamic clicks task)
Mechanistic models of sleep dynamics
Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.
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