Programming Framework for Clinical Image Analysis. Python library for MRI data processing.
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Updated
Sep 13, 2020 - Jupyter Notebook
Programming Framework for Clinical Image Analysis. Python library for MRI data processing.
Annotation and Analysis of Multiplexed Imaging Data
attempts at a form interface for generating FHIR resources using C# or Python
Example OHIF plugin based using OpenLayers
PIXI is an XNAT plugin designed to help manage and analyze preclinical imaging data.
Radiology reporting templates
Companion code for the publication: Inglese, P., Huang, H., Wu, V., Lewis, M.R. and Takats, Z., 2021. Mass recalibration for desorption electrospray ionization mass spectrometry imaging using endogenous reference ions. biorXiv
Learning materials for https://github.com/qiicr/dcmqi
Experimenting with creating functionality similar to google forms with shiny apps and fhir
DeBias decouples global bias from direct interactions in co-orientation and co-localization data.
R code and scripts to run the multiplexed imaging normalization methods, detailed in the "Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images" paper.
Running cellprofiler on eddie3 / SGE clusters
Management of a curated set of common tags for anatomic locations for imaging informatics and a basic site describing the project.
This repository contains source code used in the DICOM programming using .NET/C# Tutorials
Crowd-sourcing annotations of medical images to advance cancer research
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