Write SciJava scripts in Jupyter notebook!
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Updated
Aug 21, 2018 - Java
Write SciJava scripts in Jupyter notebook!
A collection of scripts related to Micro-Manager.
ImageJ plugin containing a collection image segmentation algorithms.
Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
Mageek is an ImageJ Java plugin to batch process microscope images
🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.
ImageJ plugin for handling NDPI files.
IHC scoring of multi-channel images
Cell segmentation of multi-channel images
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
🐍☕📑 Jython package for using SciJava's LogService for logging.
The Cx3D modeling framework in SciView and SNT
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.
Command-line based, automatic image analysis pipeline to evaluate the bactericidal efficacy of polymer surface coatings against E. coli.
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