Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
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Updated
Mar 15, 2020 - Python
Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
Create fastq symlinks for selected samples in sequencer output directories based on several criteria
📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
A Github action for building Snapcraft projects
Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.
Parse Illumina InterOp folder
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
code getter for illumina, pacbio, oxford long reads alignments.
genome assembler for cleaning, mapping and assembling genomes.
Workflow and R scripts for Giongo et al. (2024)
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
Generate a .CSV manifest file for importing multiple samples in the Illumina MiSeq machine
A modernized ART for Illumina read simulation.
Discover VNTR-associated DELs that are hard to find using Illumina reads
Add a description, image, and links to the illumina-sequencing topic page so that developers can more easily learn about it.
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