A collection of scripts to help aid PCR-based genetic variant validations.

This repository contains instructions to run the method, COGG or Correlation Optimization of Genetics and Geodemographics.

A test for distributional differences between cases and controls

🐳 Apollo 2.X Docker Image

Program that evolves complex molecular structures using genetic algorithms.

Nextflow workflows for the analysis of samples using the megSAP pipeline.

A simple Simulation of multiplying and evolving trees

R function to run CIRCUITSCAPE from an R console on Mac/Linux

snippets of code useful in bioinformatics

Simulation of the aminoacyl-tRNA-synthetase feedback loop as basis for research on genetic code evolution.

Causal Inference Networks for Determining Expression Relationships Anthology

Code and data to build and use Cis-Regulatory Hubs.

This repo is about the analysis if repeat variants in CCLE for the paper: "Werner Helicase Prevents Cell Death in Cancers with Microsatellite Instability by Resolving Large-scale Expanded (TA)n Repeats" of Wietmarschen et. al.

A re-implementation in Python3 of the open source project MutationFinder for gene mutation detection in free text.

Program for analyzing and manipulating DNA microarray data

biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.

UChicago Molecules to Organisms Fundamentals Sequence R Code: Ecology, Quantitative Bio, Genetics, Physiology, Developmental Bio

Genetic algorithms written in Javascript following the book "Genetic Algorithms with Python" by Clinton Sheppard

A pipeline to identify deleterious genetic variation in human 5'UTR regions.

Python script to easily get genes in both fasta and genebank formats and download articles from pubmed