Linux tool for relative mutation rate of different genes across viral strains.
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Updated
May 11, 2024 - Python
Linux tool for relative mutation rate of different genes across viral strains.
Python tool for relative mutation rate of different genes across viral strains.
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
Pipeline for the identification of (coding) gene structures in draft genomes.
A NextFlow pipeline for the annotation of gene homologs using SABAT.
A toolkit for identifying gene homologs in closely related species.
The post-TOGA processing pipeline
BED-to-GFF3 converter that runs in parallel
A high-performance BED-to-GTF converter written in Rust
Fastest GTF/GFF-to-BED converter chilling around
Structural variant VCF annotation, duplicate removal and comparison
GTF/GFF per gene non-overlapping exon length calculator
A bioinformatics software system designed for comparing gene annotations between different releases for a selected species. It includes Python classes for data processing, information extraction, a MySQL relational database, and web-based interfaces for dynamic data querying.
ncRNA identification, annotation and functional prediction
Nextflow workflow to generate gene track files for HiGlass
Integrative systems analysis identifying the associations between genes and biological process or modules.
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
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