Neuroimaging analysis and visualization suite
-
Updated
May 27, 2024 - C++
Neuroimaging analysis and visualization suite
Software platform for clinical neuroimaging studies
Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation
Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)
Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs
Code for Chapter 19 - A Step-By-Step Tutorial On How To Build A Machine Learning Model
Web-based Electrode Visualization
Javascript engine for 3D brain model (used by RAVE project)
A Pegasus workflow for running FreeSurfer on the Open Science Grid
GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
Shell scripts to run FreeSurfer's recon-all in parallel on multi-core machines.
Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)
A cross-platform desktop GUI for statistical/ML analysis of volumetric brain data processed from fMRI scans of over 4,000 juvenile patients.
Pydra tasks for FreeSurfer designed for Clinica
Matlab Wrapper of Surface-based Analysis. Custom Matlab functions for running analyses with FreeSurfer, CoSMoMVPA, HCP pipeline (and SamSrf)...
Add a description, image, and links to the freesurfer topic page so that developers can more easily learn about it.
To associate your repository with the freesurfer topic, visit your repo's landing page and select "manage topics."