Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata
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Updated
Jan 25, 2021
Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata
High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.
ROI Trace Selection
This program perform automated analysis of fluorescence foci and their location in bacterial cells. The program defines the membrane and cytosol compartments and it measures several attributes of the fluorescence signal within these compartments, such as the ratio of signal between cytosol and membrane and the signal profile along the cell width…
Code for spectral separation for Fiber based spectral FLIM project
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
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I wrote this ImageJ macro to analyse fluorescence microscopy images for a research article. It allows automatisation of different measurements both in whole cells as well as in a determined region of interest.
Saturation-compensated measurements for fluorescence lifetime imaging microscopy
R package to analyze microscopic images of Double-Fluorescence Systems
ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders
FUSE toolkit supports fluorescent cell image alignment and analysis.
FIJI macros for Enrichment Analysis
napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).
R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles
Bacterial chromosmal foci tracker.
This tool is meant for the manual intensity extraction of FISH spots
ImageJ Scripts for Microscope Images of Florescently Labled Cells
All this is part of my Projektarbeit (student project) @ TU Wien 2021
NuclQ - an ImageJ plugin to quantify intensity levels by distance to the nuclear membrane.
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