ROI Trace Selection

This program perform automated analysis of fluorescence foci and their location in bacterial cells. The program defines the membrane and cytosol compartments and it measures several attributes of the fluorescence signal within these compartments, such as the ratio of signal between cytosol and membrane and the signal profile along the cell width…

High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.

Lego based fluorescence microscope

PyFDAP is a Python-based analysis framework for Fluorescence Decay After Photoconversion (FDAP) experiments.

pipeline that converts Deepcell generated instance segmentation masks of nuclei from an ome-tiff to Cell Objects with auto-generated cytoplasms in QuPath

Code for spectral separation for Fiber based spectral FLIM project

fluorescence ultrasound modulated optical tomography with radiative transport equation.

Step-by-step instruction to quantify fluorescence intensities from timelapse imaging experiments

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Quantitation of migration of fluorescent spots into regions of interest.

I wrote this ImageJ macro to analyse fluorescence microscopy images for a research article. It allows automatisation of different measurements both in whole cells as well as in a determined region of interest.

Investigation of signal-to-noise ratio in frequency-domain multiphoton fluorescence lifetime imaging microscopy

Tracking cell and count mRNA inside each cell

Saturation-compensated measurements for fluorescence lifetime imaging microscopy

R package to analyze microscopic images of Double-Fluorescence Systems

ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders

A web tool for the analysis of Fluorescence Recovery After Photobleaching (FRAP) data.

pyLifetimeSpectraGenerator - A simple Python program for the generation of synthetic lifetime spectra consisting of discrete or distributed characteristic lifetimes.

Haemolymph Circulation in Mosquito larvae