ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis

ImageJ scripts for analyzing nuclei intensity and overlap in brain sections

ImageJ macros and plugins.

Helper plugin providing a table to facilitate the setting of the names associated to the Roi-group integer indexes in Fiji

FIJI macros for Enrichment Analysis

Fiji (ImageJ) Macros

Code for processing 3D timeseries image datasets

Fiji macro that splits and merges multi-dimensional TIFFs.

This repository aims to provide practical hands-on training in sequencing informatics, focusing on the analysis of genomic datasets using R, Python, and Fiji/ImageJ. It is designed to equip learners with the necessary skills to become professional programmers, data analysts, and data scientists with a strong emphasis on statistics.

ObjCounter ImageJ plugin for object segmentation and counting

Maximum of Laplacian of Gaussian filters (imageJ plugin)

Create random points in binary image and calculate number of points in objects of interest and distance to object of interest

An ImageJ plugin for intensity-based three-filter set (ratiometric) FRET 🔌

Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata

FijiTools2020 is a collection of tools designed for use in ImageJ/Fiji. The code was written for the analysis of microscopy images in the lab of Mikael Sellin, Uppsala University. Some of the scripts are meant to work in conjunction with a separately performed Trackmate analysis.

Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji

Fiji/ImageJ with mikro

A simple POM to update Bio-Formats on a Fiji distribution

☕ 🔬 🔣 Fiji Action Bars provided by the IMCF.