DEMUX, ALIGN, DESEQ2 DGE CALLS
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Updated
Jan 16, 2019 - Shell
DEMUX, ALIGN, DESEQ2 DGE CALLS
Pipeline for analyzing RNAseq data of human and mouse - beginner friendly with minimal user inputs
RNA-Seq data analysis: Quantification, Differential Gene Expression, Differential Transcripts Usage
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
Differential Gene Expression analysis in R using DESeq2
R scripts and input data for RNAseq differential gene expression without a reference genome from Ramos-Silva, Odendaal et al. 2022
Experimental code for analysis of miRNA expression in C2C12 vs. in vivo mice cells
Analysis on the acquired genes (365 genes from Glioma patients)-in relation to the paper https://www.nature.com/articles/sdata201724
Laboratory of biological Data Mining 💻
RNA-seq analysis workflow using DESeq2
Differential Gene Analysis of Telomere Microarray Data
Bioinformatic scripts for working on the UiO Abel compute cluster
Differential Gene Expression (DGE) Analysis in Curated Microarray Data of Breast Cancer Subtypes
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
A set of functions to parse and open (search query) links to genomics related and other websites for R. Useful when you want to explore e.g.: the function of a set of differentially expressed genes.
Performed a differential gene expression analysis with RNA-seq on three immunologically diverse mouse models. Differentially expressed genes were identified and a GO term enrichment analysis was done to determine their roles.
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.
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