Repository for course project in Bioinformatics Institute 2023-2024
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Updated
May 20, 2024 - Jupyter Notebook
Repository for course project in Bioinformatics Institute 2023-2024
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
MaAsLin2: Microbiome Multivariate Association with Linear Models
Differential analysis of multi-omics data based on the Tweedie distribution
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
R package for microbiome biomarker discovery
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.
A Bayesian model for the differential abundance analysis of microbiome sequencing data
Large-scale Benchmarking of Microbial Multivariable Association Methods
Large-scale Benchmarking of Microbial Multivariable Association Methods
Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
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