Request for Comments (RFCs) on the St. Jude Cloud Project.
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Updated
Apr 4, 2024 - Jupyter Notebook
CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.
Request for Comments (RFCs) on the St. Jude Cloud Project.
Prototype implementation of LivePaper with GIS indices as the subject.
CWL for GDC samtools mpileup
Peak-to-Trough-Rate Calculater wrapped by CWL
CWL workflows and tools for the miRNA-Seq workflow
Repository to share data, workflows, apps, and scripts working toward the goal of execution of BioCompute Objects (BCO).
Template for running Toil on LSF HPC with ELK stack logging
CWL examples with the OrfeoToolbox
GDC Tumor-only Somatic Variant Calling Workflow
A C++ program for populating the .cwl file for TeXstudio auto-completion.
Workflow code for the CLIN project
Resources for RNA-SEQ pipeline analysis
Workflows written in common workflow language (CWL) for testing SAPPORO.
Shiny app to upgrade Common Workflow Language (CWL) apps from sbg:draft2 to v1.0
Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community
Released January 2015