libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
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Updated
May 27, 2024 - C
libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
Burrows-Wheeler transforms steps visualization
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]
Accurate, resource-frugal and deterministic DNA sequence classifier.
Afternotes from the courses of the master degree course of Computer Science and Information Technology, from the Ca' Foscari University of Venice.
libcubwt is a library for GPU accelerated suffix array and burrows wheeler transform construction.
A simple implementation of Burrows-Wheeler Transforms (BWT) for DNA in Python with a server and a client to host and send requests
Implementation of the Burrows-Wheeler Transform in Go
Coursera algorithms 2 (from Princeton Uni)
Micro genome assembler. Uses BWT for seeding/pattern matching and a greedy score based aligner.
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
ProPhex – an exact k-mer index using Burrows-Wheeler Transform
Project Scientific Programming Python
A test GitHub repository for a set of client/server python scripts (as part of the Scientific Programming class).
Burrows-Wheeler Transform and FM-index in golang
Extreme inline text compression for HTML / JS. A custom pipeline that generates stand-alone HTML or JS files which embed competitively compressed self-extracting text, with file sizes of 25% - 40% the original.
Programming assignments of BIO314 @ IISER-P
Algorithm design course in my forth semester of university
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