Farida Hanna Campbell 2023
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Updated
Jan 15, 2024 - Jupyter Notebook
Farida Hanna Campbell 2023
Fine-tuning pre-trained BERT architectures from Hugging face
This project is a demo for Bert Question Answering on medical data.
Literature Mining for Neurodegenerative disease
The model identifies chemical components and genes named entities and extracts the relations of the chemical-gene pair jointly. It utilizes the BioBERT model in the named entity recognition and the graphs neural networks for the RE subtasks.
Multi Label Text Classification of ICD-10-CM codes on the clinical record corpus for eHealth Lab CLEF - 2020
summer internship project @ JetBrains Research
A comparative study of SVM, Random Forest, and BioBERT models for enhancing medical meta-analysis through accurate literature classification.
NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan membuat klasifikasi apakah teks tersebut mempunyai entitas plant atau disease, memberi label pada teks, menguji hubungan entitas plant dan disease, menilai kecocokan antara kedua entitas, membandingkan hasil uji dengan menggunakan models BERT
A simple binary prediction model that gets the Alzheimer's drugs' description texts as input. It classifies the drugs into two Small Molecules (SM) and Disease modifying therapies (DMT) categories. The model utilizes BERT for word embeddings.
BioBert for Q&A
Ping Lab Intern Project, Summar, 2022: Building Named Entity Recognition model with fine tuning BioBERT - a data engineering approach
Training and computational/visualization analysis of BERT and BioBERT using PyTorch and huggingface.
A tool capable of parsing datasets of papers from pubmed, annotating entities that appear using bio-BERT, creating a network of cooccurrences on which to perform analysis with various algorithms
Bi Master - Grupo de desafios de NLP: Classificação Multiclasse, BIOBERT, spaCy, NER, POS, Tópicos, Geração de Texto, sentence-bert, Tensorflow USEm.
🧬 Fine-Tuning Large Language and Protein Models on a single T4 GPU via Distillation, Quantization and Low-Rank Adaptation to run inference on proteins functions.
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
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