Client Serive of ARGpore pipeline for the analysis of antibiotic resistance in nanopore reads
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Updated
May 30, 2017 - CSS
Client Serive of ARGpore pipeline for the analysis of antibiotic resistance in nanopore reads
Antibiotic Resistance in Metagenomes
Citizen science project investigating antibiotic resistance in wildlife. A collaboration between Macquarie University, Taronga Zoo and University of Sydney
Antimicrobial resistance prediction app for KBase
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
Extract discriminatory ARGs from metagenomics samples
Simulator of Antibiotic Therapy Effects on the Dynamics of Bacterial Populations
Python package to interact with the PATRIC database (https://www.patricbrc.org)
Antibiotic Resistance Genes Finding
A simple package for simulations of microbial growth experiments with realistic sources of error.
A resistome profiler for Graphing Resistance Out Of meTagenomes
Natural language processing chatbot answering questions about antibiotics and antibiotic resistance
Interaction networks between antibiotic exposure, microbial factors and clinical features in nursing home patients influence the risk of catheter-associated urinary tract infection.
Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.
Interpretable genotype-to-phenotype models with rule-based classifiers
An optimal experimental design framework for accelerating knowledge discovery using gene expression data
Reproducible scripts for the Su et al (2020) paper.
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
Data and code for Kimbell et al., 2021
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