An examination of genomic resistance and virulence of Escherichia marmotae dentified in deer faeces Portumna, Galway.
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Updated
Jul 18, 2022 - Shell
An examination of genomic resistance and virulence of Escherichia marmotae dentified in deer faeces Portumna, Galway.
Java simulation of antibiotic resistance. Pretty cute.
An optimal experimental design framework for accelerating knowledge discovery using gene expression data
This repository contains a Python-based genome assembler designed to perform k-mer spectrum-based error correction and generate SAM files for visualizing genome mappings. It supports genomic data analysis with a focus on identifying mutations relevant to antibiotic resistance.
Client Serive of ARGpore pipeline for the analysis of antibiotic resistance in nanopore reads
Reproducible scripts for the Su et al (2020) paper.
Virulence and Antibiotic Resistance Genes used with JASEN pipeline at the university hospital of Linköping, Sweden.
Early prediction of Antimicrobial Resistance (AMR) using Machine Learning
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
Antimicrobial resistance prediction app for KBase
Citizen science project investigating antibiotic resistance in wildlife. A collaboration between Macquarie University, Taronga Zoo and University of Sydney
A simple simulator that shows the easy way how an antibiogram works
Antibiotic Resistance in Metagenomes
Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Simulating antibiotic resistant bacteria growth
Project that estimates the use and overuse of antibiotics in Idaho based on Medicare Part D data.
Metabundance: Investigating ARG abundance in metagenomes and linking them to MGEs
Antibiotic Resistance Genes Finding
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