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malformed xml #234

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eigensinnig opened this issue May 16, 2021 · 4 comments
Open

malformed xml #234

eigensinnig opened this issue May 16, 2021 · 4 comments
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@eigensinnig
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When importing some gpx-files with usage of extensions will broke the file.

I use a downloaded gpx file, which worked with all tools. When importing and exporting the file it is broken.
This mainly is caused by a Line-Style-Extension.

import gpxpy
import gpxpy.gpx

fn = "/Users/oe/Desktop/testfile.gpx"

with open(fn) as f:
    gf = gpxpy.parse(f)

with open(fn+".new.gpx", 'w+') as f:
        f.write(gf.to_xml())

with the following example file.

testfile.gpx

@ekspla
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ekspla commented May 16, 2021

Definitions of nsmap and schema location might help. Try using the following code:

import gpxpy
import gpxpy.gpx

fn = "testfile.gpx"

with open(fn) as f:
    gf = gpxpy.parse(f)

gf.nsmap['gpxtpx'] = 'http://www.garmin.com/xmlschemas/TrackPointExtension/v1'
gf.nsmap['gpxx'] = 'http://www.garmin.com/xmlschemas/GpxExtensions/v3'
gf.nsmap['gpx_style'] = 'http://www.topografix.com/GPX/gpx_style/0/2'
gf.schema_locations = [
    'http://www.topografix.com/GPX/1/1',
    'http://www.topografix.com/GPX/1/1/gpx.xsd',
    'http://www.garmin.com/xmlschemas/GpxExtensions/v3',
    'http://www.garmin.com/xmlschemas/GpxExtensionsv3.xsd',
    'http://www.garmin.com/xmlschemas/TrackPointExtension/v1',
    'http://www.garmin.com/xmlschemas/TrackPointExtensionv1.xsd',
    'http://www.topografix.com/GPX/gpx_style/0/2',
    'http://www.topografix.com/GPX/gpx_style/0/2/gpx_style.xsd']

with open(fn+".new.gpx", 'w+') as f:
        f.write(gf.to_xml('1.1'))

@fernandobrito
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Thanks a lot, @ekspla!

I just started using this library this week and I noticed that my GPX files went from:

<extensions>
  <line xmlns="http://www.topografix.com/GPX/gpx_style/0/2">
    (omitted)
  </line>
</extensions>

to

<extensions>
  <http://www.topografix.com/GPX/gpx_style/0/2:line>
    (omitted)
  </http://www.topografix.com/GPX/gpx_style/0/2:line>
</extensions>

after I loaded it and saved it.

Thanks to your comment, I just had to add

self._data.nsmap['gpx_style'] = 'http://www.topografix.com/GPX/gpx_style/0/2'

before saving and the problem was fixed 🙌 .

@tkrajina
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tkrajina commented Nov 4, 2021

Thanks @fernandobrito . I don't have the time to fix this immediately, but at least I wrote a test. If somebody wants to try, it's here 0f6c473

To run that test:

python3 -m unittest test.GPXTests.test_extension_with_xmlns

@ekspla
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ekspla commented Mar 5, 2023

I am writing this comment in the hope of someone's PR fixing most of the namespace issues very soon.

I think there are more than one issue related to the namespace (such as #242), and the issues should be solved together by a single PR. The patch I will show below is of adhoc/preliminary version that may introduce another issues/errors, and that is not suitable as PR for review.

There are at least two problems in the code related to these namespace issues.

  1. If more than one xmlns without prefix exist when parsing gpx, the former is overwritten by the last one.
  2. Default namespace is fixed/defined to be 'http://www.topografix.com/GPX/1/1' in gpx.to_xml().

When parsing the given xml (here after, 'test_linestyle.gpx') with gpx_style as shown in #254:

def parse() in class GPXParser of parser.py https://github.com/tkrajina/gpxpy/blob/dev/gpxpy/parser.py#L105-#L109

after line 105-107, prefixes and URIs are as followings.

 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
prefix = 'xsi', URI = "http://www.w3.org/2001/XMLSchema-instance"

 xmlns="http://www.topografix.com/GPX/1/1"
prefix ='', URI = "http://www.topografix.com/GPX/1/1"

 xmlns:topografix="http://www.topografix.com/GPX/Private/TopoGrafix/0/1"
prefix = 'topografix', URI = "http://www.topografix.com/GPX/Private/TopoGrafix/0/1"

 xmlns="http://www.topografix.com/GPX/gpx_style/0/2"
prefix = '', URI = "http://www.topografix.com/GPX/gpx_style/0/2"

Note that the second one (GPX/1/1) is overwritten by the forth one because of the same prefix ('').

at line 108-109

if prefix == '':
    prefix = 'defaultns'  # alias default for easier handling

Now, the namespace without prefix ('') is renamed as 'defaultns' for handling.

Finally when the gpx file is parsed, nsmap is as follows:

>>> gpx.nsmap
{'xsi': 'http://www.w3.org/2001/XMLSchema-instance', 
'defaultns': 'http://www.topografix.com/GPX/gpx_style/0/2', 
'topografix': 'http://www.topografix.com/GPX/Private/TopoGrafix/0/1'}
>>>

This is because, as described before, the second xmlns (GPX/1/1) was overwritten by the fourth one (gpx_style).

When serializing to xml,

def gpx_fields_to_xml() of gpxfield.py at line 501https://github.com/tkrajina/gpxpy/blob/dev/gpxpy/gpxfield.py#L501

namespaces.remove('defaultns')

'defaultns' is removed. So it's now renamed as '' once again.

def to_xml() in class GPX of gpx.py at line 2694 https://github.com/tkrajina/gpxpy/blob/dev/gpxpy/gpx.py#L2694

self.nsmap['defaultns'] = 'http://www.topografix.com/GPX/{}'.format(version_path)

'defaultns' is appended. Note that namespace other than GPX/1/1 is not allowed to be the default.

In these combination, 'defaultns' is replaced in nsmap from

'http://www.topografix.com/GPX/gpx_style/0/2'

to

'http://www.topografix.com/GPX/1/1'

An adhoc/preliminary version of patch is as followings. This patch is not tested and may cause another issues/errors.

In parser.py https://github.com/tkrajina/gpxpy/blob/dev/gpxpy/parser.py#L105-L114

    def parse(self, version: Optional[str]=None) -> mod_gpx.GPX:
        for namespace in mod_re.findall(r'\sxmlns:?[^=]*="[^"]+"', self.xml):
            prefix, _, URI = namespace[6:].partition('=')
            prefix = prefix.lstrip(':')
            if prefix == '':
                #prefix = 'defaultns'  # alias default for easier handling

                if  'defaultns' not in self.gpx.nsmap:
                    prefix = 'defaultns'
                else:
                    prefix = 'ns'

            else:
                if prefix.startswith("ns"):

Using this patch,

>>> with open('test_linestyle.gpx', 'rb') as f:
...     test_linestyle = gpxpy.parse(f.read().decode(), '1.1')
...
>>> test_linestyle.nsmap
{'xsi': 'http://www.w3.org/2001/XMLSchema-instance', 
'defaultns': 'http://www.topografix.com/GPX/1/1', 
'topografix': 'http://www.topografix.com/GPX/Private/TopoGrafix/0/1', 
'ns': 'http://www.topografix.com/GPX/gpx_style/0/2'}
>>>
>>> with open('test_linestyle_1.gpx', 'wb') as f:
...     f.write(test_linestyle.to_xml().encode('utf-8'))
...
912
>>>
>>> with open('test_linestyle_1.gpx', 'rb') as f:
...     test_linestyle_1 = gpxpy.parse(f.read().decode(), '1.1')
...
>>>
>>> test_linestyle_1.nsmap
{'defaultns': 'http://www.topografix.com/GPX/1/1', 
'ns': 'http://www.topografix.com/GPX/gpx_style/0/2', 
'topografix': 'http://www.topografix.com/GPX/Private/TopoGrafix/0/1', 
'xsi': 'http://www.w3.org/2001/XMLSchema-instance'}
>>>
>>> test_linestyle_1.to_xml()
'<?xml version="1.0" encoding="UTF-8"?>\n
<gpx xmlns="http://www.topografix.com/GPX/1/1" 
xmlns:ns="http://www.topografix.com/GPX/gpx_style/0/2" 
xmlns:topografix="http://www.topografix.com/GPX/Private/TopoGrafix/0/1" 
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
xsi:schemaLocation="http://www.topografix.com/GPX/1/1 
http://www.topografix.com/GPX/1/1/gpx.xsd 
http://www.topografix.com/GPX/Private/TopoGrafix/0/1 
http://www.topografix.com/GPX/Private/TopoGrafix/0/1/topografix.xsd" 
version="1.1" creator="GaiaGPS for Android">\n
  <trk>\n
    <extensions>\n
      <ns:line>\n
        <ns:color>5E7A8C</ns:color>\n
      </ns:line>\n
    </extensions>\n
    <trkseg>\n
      <trkpt lat="0.0" lon="0.0">\n
        <ele>0.0</ele>\n
        <time>2023-02-02T01:00:00Z</time>\n
      </trkpt>\n
      <trkpt lat="1.0" lon="0.0">\n
        <ele>0.0</ele>\n
        <time>2023-02-02T01:50:00Z</time>\n
      </trkpt>\n
    </trkseg>\n
  </trk>\n
  </gpx>'
>>>

>>> for track in test_linestyle_1.tracks:
...     for segment in track.segments:
...         for point in segment.points:
...             print(point.time, point.latitude, point.longitude)
...
2023-02-02 01:00:00+00:00 0.0 0.0
2023-02-02 01:50:00+00:00 1.0 0.0
>>>

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