forked from lijingya/ELMER
/
appveyor.yml
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/
appveyor.yml
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# DO NOT CHANGE the "init" and "install" sections below
# Download script file from GitHub
init:
ps: |
$ErrorActionPreference = "Stop"
Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
Import-Module '..\appveyor-tool.ps1'
install:
ps: Bootstrap
cache:
- C:\RLibrary
environment:
matrix:
- R_VERSION: release
R_ARCH: x64
GCC_PATH: mingw_64
USE_RTOOLS: true
WARNINGS_ARE_ERRORS: 0
DOWNLOAD_FILE_METHOD: wininet
R_REMOTES_NO_ERRORS_FROM_WARNINGS: TRUE
build_script:
- travis-tool.sh install_bioc BiocVersion
- travis-tool.sh install_deps
- travis-tool.sh install_bioc_deps
- travis-tool.sh install_bioc ALL
- travis-tool.sh install_bioc GenomeInfoDbData
- travis-tool.sh install_bioc BiocStyle
- travis-tool.sh install_bioc GenomicRanges
- travis-tool.sh install_bioc Biobase
- travis-tool.sh install_bioc maftools
- travis-tool.sh install_bioc affy
- travis-tool.sh install_bioc EDASeq
- travis-tool.sh install_bioc edgeR
- travis-tool.sh install_bioc biomaRt
- travis-tool.sh install_bioc IRanges
- travis-tool.sh install_bioc supraHex
- travis-tool.sh install_bioc S4Vectors
- travis-tool.sh install_bioc ComplexHeatmap
- travis-tool.sh install_bioc SummarizedExperiment
- travis-tool.sh install_bioc DO.db BiocGenerics
- travis-tool.sh install_bioc GenomicFeatures
- travis-tool.sh install_bioc TxDb.Hsapiens.UCSC.hg19.knownGene
- travis-tool.sh install_bioc limma
- travis-tool.sh install_bioc genefilter
- travis-tool.sh install_bioc ConsensusClusterPlus
- travis-tool.sh install_bioc pathview
- travis-tool.sh install_bioc clusterProfiler
- travis-tool.sh install_bioc GenomicInteractions
- travis-tool.sh install_github BioinformaticsFMRP/TCGAbiolinks tiagochst/ELMER.data
test_script:
- travis-tool.sh run_tests
on_failure:
- 7z a failure.zip *.Rcheck\*
- appveyor PushArtifact failure.zip
artifacts:
- path: '*.Rcheck\**\*.log'
name: Logs
- path: '*.Rcheck\**\*.out'
name: Logs
- path: '*.Rcheck\**\*.fail'
name: Logs
- path: '*.Rcheck\**\*.Rout'
name: Logs
- path: '\*_*.tar.gz'
name: Bits
- path: '\*_*.zip'
name: Bits
notifications:
- provider: Slack
incoming_webhook:
secure: 7UV/4W8G1XsjPOnS7evgJipqeUPQtfYnnKRov2i6hSKyMAyec8OCi0SGnI/vQxa7131I0tCwQL9mSKN9eJP4QLR6t2MOnNpuvKKFoMriyrE=
on_build_success: false
on_build_failure: true