which cell is rejected

[wangjiawen2013]

Hi, I want to generate a plot similar to that in kBET paper:

Where can I get the results to indicate whether a cell is rejected or not ?

[mbuttner]

Hi @wangjiawen2013

thanks for the question! The kBET function returns a list of values, one of them is called results (see Usage of kBET function for details). This contains all p-values for all tested cells. You can classify into "Rejected" and "Not rejected" by thresholding those values with the alpha level you need (by default 0.05).