BARs related to analysis of non-image numerical data.
Displays a box-and-whisker plot from data in an ImageJ table using the JFreeChart library, bundled with Fiji. Data can be split into groups and plot can be exported as vector graphics.
Generates a polar plot from data in an ImageJ table using the JFreeChart library, bundled with Fiji. plot can be exported as vector graphics.
Plots relative and cumulative frequencies of a measured parameter. Detailed functionality:
- Retrieves relative and cumulative frequencies; 2) Fits a Normal distribution to
histogram of relative frequencies; 3) Offers several methods to determine the optimal
number of histogram bins: Square root (used by e.g., M. Excel), Sturges', Scott's (used by
Analyze>Distribution...) and Freedman–Diaconis. More information can be found on its initial documentation page, that has yet to be transferred to imagej.net.
Retrieves local maxima and minima from an ImageJ plot, allowing several filtering options such as: 1) Peak amplitude; 2) Peak height and 3) Peak width. More information can be found on its documentation page
Fits a polynomial function (of arbitrary degree) to sampled data from an ImageJ plot using The Apache Commons Mathematics Library distributed with Fiji. Features an heuristic algorithm for guessing a polynomial of 'best fit'. It was first designed to complement the Sholl Analysis plugin.
The interactive plotting GUI for ImageJ. Interactively creates a multi-series XY plot (with or without error bars), from ImageJ measurements, plugin tables or imported spreadsheet data. Multi-series vector field plots are also supported.
Retrieves nearest neighbor distances from a 2D/3D list of centroid coordinates, and plots the frequencies of calculated distances.
- Most of these scripts use PlotUtils to script the JFreeChart API
- Other BAR scripts dealing with data analysis can be accessed through the Script Editor templates menu
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