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Error while running draw_fusion.R #234
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Can you send me the content of the file you passed as an argument to Which version of Arriba is this? |
@suhrig I use Arriba 2.4.0. |
Can you send me the first fusion of the fusions file (AGAP3:BRAF)? |
#gene1 gene2 strand1(gene/fusion) strand2(gene/fusion) breakpoint1 breakpoint2 site1 site2 type split_reads1 split_reads2 discordant_mates coverage1 coverage2 confidence reading_frame tags retained_protein_domains closest_genomic_breakpoint1 closest_genomic_breakpoint2 gene_id1 gene_id2 transcript_id1 transcript_id2 direction1 direction2 filters fusion_transcript peptide_sequence read_identifiers |
I cannot reproduce the error. Which GTF file did you use to run Arriba and which one did you use to run |
Please look -- ./draw_fusions.R |
In the beginning you wrote that you used |
Do you need any further help on this? |
Loading annotation
Read 3010595 records
Loading protein domains
Read 134356 records
Drawing fusion #1: AGAP3:BRAF
Error in text.default(tip, y + 0.03, bandName, cex = fontSize, adj = c(0.5, :
zero-length 'labels' specified
Calls: drawIdeogram -> text -> text.default
Execution halted
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