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I am trying to generate coverage plots for some of the genes that are expressed in my data. It works for other genes but not for these 3 genes and gives me an error
Testing 3 genes and 75234 peaks
Error in LinkPeaks(object = WT, peak.assay = "ATAC", expression.assay = "SCT", :
Could not find gene coordinates for requested genes
I can see the peaks in the promoter region in one of the genes and in the distal region in other gene in the annotation files.
Is it possible to plot the coverage around a gene even if it is not defined as peak.
This is the code I am using
WT <- LinkPeaks(
object = WT,
peak.assay = "ATAC",
expression.assay = "SCT",
genes.use = genes
)
Any suggestions?
The text was updated successfully, but these errors were encountered:
Hi,
I am trying to generate coverage plots for some of the genes that are expressed in my data. It works for other genes but not for these 3 genes and gives me an error
Testing 3 genes and 75234 peaks
Error in LinkPeaks(object = WT, peak.assay = "ATAC", expression.assay = "SCT", :
Could not find gene coordinates for requested genes
I can see the peaks in the promoter region in one of the genes and in the distal region in other gene in the annotation files.
Is it possible to plot the coverage around a gene even if it is not defined as peak.
This is the code I am using
WT <- LinkPeaks(
object = WT,
peak.assay = "ATAC",
expression.assay = "SCT",
genes.use = genes
)
Any suggestions?
The text was updated successfully, but these errors were encountered: