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The factor 2 will cause the inconsistencies when plotting effective population size. And this has been disscussed here stschiff/msmc2#17 (comment). You should also update the Ne plot in the latest tutorial. Thank you very much.
OK, I haven't touched the tutorial for a long time, but you're right, I should revisit it and update all the necessary plots. It's not super high on my todo list, but it's noted.
Dear @stschiff
The factor 2 will cause the inconsistencies when plotting effective population size. And this has been disscussed here stschiff/msmc2#17 (comment). You should also update the Ne plot in the latest tutorial. Thank you very much.
lines(afrDat$left_time_boundary/mu*gen, (1/afrDat$lambda)/(2*mu), type="s", col="red")
Sincerely,
Zheng zhuqing
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