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Can't find exact match in PDB #260

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smilenaderi opened this issue Apr 1, 2024 · 2 comments
Open

Can't find exact match in PDB #260

smilenaderi opened this issue Apr 1, 2024 · 2 comments

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@smilenaderi
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Hi I'm using foldseek easy search to find a pdb in PDB100. On webserver it finds exact match with prob100. But when I do in on my side it does not show the exact pdb. Is there any masking or filtering, if the pdb is inside database? Thank you

@milot-mirdita
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Sorry, I responded to the wrong issue.

What query are you searching with?

@smilenaderi
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No worries, thank you. this is the command. for example pdb =6ny8 fails

f'''foldseek easy-search {destination_query_path} database/pdb {output_file} tmp4 --alignment-type 1 --format-output "query,target,fident,alnlen,mismatch,gapopen,qstart,qend,tstart,tend,evalue,bits,qtmscore"

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