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Count of match states #246

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davtjon opened this issue Feb 23, 2024 · 0 comments
Open

Count of match states #246

davtjon opened this issue Feb 23, 2024 · 0 comments

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@davtjon
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davtjon commented Feb 23, 2024

I can't seem to find a format-output option in easy-search that prints the number of match states in the alignment. This is more useful than alnlen coverage when deciding whether a protein can be a useful template for comparative modelling. I've resorted to counting the M states in the cigar output, which makes the output files rather big, but am I missing a better/simpler option?

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