easy-cluster with external db

[xnought]

Can easy-cluster take one of the external databases as input?

ie with one of these that you have listed

  Name                   	Type     	Taxonomy	Url
- Alphafold/UniProt   	Aminoacid	     yes	https://alphafold.ebi.ac.uk/
- Alphafold/UniProt50 	Aminoacid	     yes	https://alphafold.ebi.ac.uk/
- Alphafold/Proteome  	Aminoacid	     yes	https://alphafold.ebi.ac.uk/
- Alphafold/Swiss-Prot	Aminoacid	     yes	https://alphafold.ebi.ac.uk/
- ESMAtlas30          	Aminoacid	       -	https://esmatlas.com
- PDB                 	Aminoacid	     yes	https://www.rcsb.org

or do I have to go through a different route? I'd greatly appreciate any direction here.

Note

When I gave easy-cluster a shot with the PDB (named pdb below) database I just get this

So I suspect those external databases are only for search? How wrong am I here?

[milot-mirdita]

The easy-cluster and easy-linclust workflows don't take databases as input. You have to use the cluster workflow.

This is a inconsistent since we added support for query database input to easy-search and not the clustering workflows. Sorry about that!

[martin-steinegger]

We will add this in future as support to easy-cluster

[xnought]

Awesome!