Installation issue: bison (Spack v0.22) #44207

harshula · 2024-05-15T13:51:18Z

Steps to reproduce the issue

$ spack spec -I bison %intel@2021.10.0 target=x86_64
Input spec
--------------------------------
 -   bison%intel@2021.10.0 arch=None-None-x86_64

Concretized
--------------------------------
 -   bison@3.8.2%intel@2021.10.0~color build_system=autotools arch=linux-rocky8-x86_64
[e]      ^glibc@2.28%gcc@8.5.0 build_system=autotools arch=linux-rocky8-x86_64
[+]      ^gmake@4.4.1%gcc@8.5.0~guile build_system=generic arch=linux-rocky8-x86_64
[+]          ^gcc-runtime@8.5.0%gcc@8.5.0 build_system=generic arch=linux-rocky8-x86_64
[+]      ^m4@1.4.19%intel@2021.10.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rocky8-x86_64
[+]          ^diffutils@3.10%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64
[+]          ^libsigsegv@2.14%intel@2021.10.0 build_system=autotools arch=linux-rocky8-x86_64
...

Error message

/tmp/root/spack-stage/spack-stage-bison-3.8.2-u3myxz7277cwla52laeaezqhoizaqmwa/spack-src/build-aux/missing: line 81: makeinfo: command not found
WARNING: 'makeinfo' is missing on your system.
         You should only need it if you modified a '.texi' file, or
         any other file indirectly affecting the aspect of the manual.
         You might want to install the Texinfo package:
         
         The spurious makeinfo call might also be the consequence of
         using a buggy 'make' (AIX, DU, IRIX), in which case you might
         want to install GNU make:
         
make[2]: *** [Makefile:9582: /tmp/root/spack-stage/spack-stage-bison-3.8.2-u3myxz7277cwla52laeaezqhoizaqmwa/spack-src/doc/bison.info] Error 127
make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-bison-3.8.2-u3myxz7277cwla52laeaezqhoizaqmwa/spack-src/spack-build'
make[1]: *** [Makefile:10377: all-recursive] Error 1
make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-bison-3.8.2-u3myxz7277cwla52laeaezqhoizaqmwa/spack-src/spack-build'
make: *** [Makefile:3866: all] Error 2

Information on your system

Spack: 0.22.0 (5fe93fe)
Python: 3.6.8
Platform: linux-rocky8-skylake
Concretizer: clingo

Additional information

Adding a depends_on("texinfo") resolves the issue.

General information

I have run spack debug report and reported the version of Spack/Python/Platform
I have run spack maintainers <name-of-the-package> and @mentioned any maintainers
I have uploaded the build log and environment files
I have searched the issues of this repo and believe this is not a duplicate

The text was updated successfully, but these errors were encountered:

harshula · 2024-05-16T01:50:31Z

It appears that the removal of depends_on("diffutils", type="build") in #42209 is causing build error. The build succeeds when it is added. I'm not suggesting that we should do that. The warning/error message suggests texinfo:

/tmp/root/spack-stage/spack-stage-bison-3.8.2-u3myxz7277cwla52laeaezqhoizaqmwa/spack-src/build-aux/missing: line 81: makeinfo: command not found
WARNING: 'makeinfo' is missing on your system.
         You should only need it if you modified a '.texi' file, or
         any other file indirectly affecting the aspect of the manual.
         You might want to install the Texinfo package:
         
         The spurious makeinfo call might also be the consequence of
         using a buggy 'make' (AIX, DU, IRIX), in which case you might
         want to install GNU make:

wdconinc · 2024-05-19T01:38:37Z

@alecbcs Do you want to take a look at this in the context of #42209?

alecbcs · 2024-05-20T17:21:16Z

@harshula are you able to install bison%gcc? I can't reproduce on rhel8.

wdconinc · 2024-05-20T17:31:25Z

Note also #44245, @sethrj.

sethrj · 2024-05-20T21:53:59Z

Thanks @wdconinc this is indeed the error I saw.

harshula · 2024-05-21T05:23:30Z

Hi @alecbcs ,

Using gcc@8.5.0 still results in a build error. I'm using this Dockerfile: https://github.com/ACCESS-NRI/build-ci/blob/main/containers/Dockerfile.base-spack .

Are you testing on a RHEL 8 minimal installation? If not, is it possible that makeinfo is installed via the RHEL package manager? What's the output of find / -iname makeinfo?

# spack compilers
==> Available compilers
-- gcc rocky8-x86_64 --------------------------------------------
gcc@8.5.0

-- intel rocky8-x86_64 ------------------------------------------
intel@2021.2.0

-- oneapi rocky8-x86_64 -----------------------------------------
oneapi@2021.2.0

# spack debug report
* **Spack:** 0.22.0 (8cc6b5a711ac01325a3fd90c8054236727b19bb4)
* **Python:** 3.6.8
* **Platform:** linux-rocky8-skylake
* **Concretizer:** clingo

# spack install bison %gcc target=x86_64
[+] /usr (external glibc-2.28-6bfinv7zwwffcz4l7b4cb6ndkdy77yqv)
[+] /opt/release/linux-rocky8-x86_64/gcc-8.5.0/gcc-runtime-8.5.0-xvjgomg5sceyxwzzma4lejwdhh4lp7xe
[+] /opt/release/linux-rocky8-x86_64/gcc-8.5.0/gmake-4.4.1-nql6rhtimta2o7fpa2gbgybf2e6qd4vr
==> Installing libsigsegv-2.14-rwk2eujdeeky6sjltsc7mzmagljn5m5j [4/7]
==> No binary for libsigsegv-2.14-rwk2eujdeeky6sjltsc7mzmagljn5m5j found: installing from source
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/cd/cdac3941803364cf81a908499beb79c200ead60b6b5b40cad124fd1e06caa295.tar.gz
==> No patches needed for libsigsegv
==> libsigsegv: Executing phase: 'autoreconf'
==> libsigsegv: Executing phase: 'configure'
==> libsigsegv: Executing phase: 'build'
==> libsigsegv: Executing phase: 'install'
==> libsigsegv: Successfully installed libsigsegv-2.14-rwk2eujdeeky6sjltsc7mzmagljn5m5j
  Stage: 0.02s.  Autoreconf: 0.00s.  Configure: 4.16s.  Build: 0.49s.  Install: 0.10s.  Post-install: 0.02s.  Total: 4.83s
[+] /opt/release/linux-rocky8-x86_64/gcc-8.5.0/libsigsegv-2.14-rwk2eujdeeky6sjltsc7mzmagljn5m5j
==> Installing diffutils-3.10-jcdcs2xks3vxhlj6tdmrdfotaqes7gjz [5/7]
==> No binary for diffutils-3.10-jcdcs2xks3vxhlj6tdmrdfotaqes7gjz found: installing from source
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/90/90e5e93cc724e4ebe12ede80df1634063c7a855692685919bfe60b556c9bd09e.tar.xz
==> No patches needed for diffutils
==> diffutils: Executing phase: 'autoreconf'
==> diffutils: Executing phase: 'configure'
==> diffutils: Executing phase: 'build'
==> diffutils: Executing phase: 'install'
==> diffutils: Successfully installed diffutils-3.10-jcdcs2xks3vxhlj6tdmrdfotaqes7gjz
  Stage: 0.10s.  Autoreconf: 0.00s.  Configure: 23.57s.  Build: 2.41s.  Install: 0.72s.  Post-install: 0.04s.  Total: 26.89s
[+] /opt/release/linux-rocky8-x86_64/gcc-8.5.0/diffutils-3.10-jcdcs2xks3vxhlj6tdmrdfotaqes7gjz
==> Installing m4-1.4.19-qziii76ocm2svdyhywwp6bd3v6favv67 [6/7]
==> No binary for m4-1.4.19-qziii76ocm2svdyhywwp6bd3v6favv67 found: installing from source
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/3b/3be4a26d825ffdfda52a56fc43246456989a3630093cced3fbddf4771ee58a70.tar.gz
==> Applied patch /opt/spack/var/spack/repos/builtin/packages/m4/checks-198.sysval.1.patch
==> Applied patch /opt/spack/var/spack/repos/builtin/packages/m4/checks-198.sysval.2.patch
==> Ran patch() for m4
==> m4: Executing phase: 'autoreconf'
==> m4: Executing phase: 'configure'
==> m4: Executing phase: 'build'
==> m4: Executing phase: 'install'
==> m4: Successfully installed m4-1.4.19-qziii76ocm2svdyhywwp6bd3v6favv67
  Stage: 0.10s.  Autoreconf: 0.00s.  Configure: 26.53s.  Build: 4.27s.  Install: 0.93s.  Post-install: 0.07s.  Total: 31.98s
[+] /opt/release/linux-rocky8-x86_64/gcc-8.5.0/m4-1.4.19-qziii76ocm2svdyhywwp6bd3v6favv67
==> Installing bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz [7/7]
==> No binary for bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz found: installing from source
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/06/06c9e13bdf7eb24d4ceb6b59205a4f67c2c7e7213119644430fe82fbd14a0abb.tar.gz
==> No patches needed for bison
==> bison: Executing phase: 'autoreconf'
==> bison: Executing phase: 'configure'
==> bison: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j16' 'V=1'

4 errors found in build log:
     2451      rc=$?; \
     2452      CDPATH="${ZSH_VERSION+.}:" && cd /tmp/root/spack-stage/spack-sta
             ge-bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src && \
     2453      $restore $backupdir/* `echo ".//tmp/root/spack-stage/spack-stage
             -bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/doc/bison.
             info" | sed 's|[^/]*$||'`; \
     2454    fi; \
     2455    rm -rf $backupdir; exit $rc
     2456    /tmp/root/spack-stage/spack-stage-bison-3.8.2-336eticbz33uab33wkry
             ica2zjqkptjz/spack-src/build-aux/missing: line 81: makeinfo: comma
             nd not found
  >> 2457    WARNING: 'makeinfo' is missing on your system.
     2458             You should only need it if you modified a '.texi' file, o
             r
     2459             any other file indirectly affecting the aspect of the man
             ual.
     2460             You might want to install the Texinfo package:
     2461             <https://www.gnu.org/software/texinfo/>
     2462             The spurious makeinfo call might also be the consequence 
             of
     2463             using a buggy 'make' (AIX, DU, IRIX), in which case you m
             ight
     2464             want to install GNU make:
     2465             <https://www.gnu.org/software/make/>
  >> 2466    make[2]: *** [Makefile:9582: /tmp/root/spack-stage/spack-stage-bis
             on-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/doc/bison.info
             ] Error 127
     2467    make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-biso
             n-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/spack-build'
  >> 2468    make[1]: *** [Makefile:10377: all-recursive] Error 1
     2469    make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-biso
             n-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/spack-build'
  >> 2470    make: *** [Makefile:3866: all] Error 2

See build log for details:
  /tmp/root/spack-stage/spack-stage-bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-build-out.txt

/tmp/root/spack-stage/spack-stage-bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/build-aux/missing: line 81: makeinfo: command not found
WARNING: 'makeinfo' is missing on your system.
         You should only need it if you modified a '.texi' file, or
         any other file indirectly affecting the aspect of the manual.
         You might want to install the Texinfo package:
         <https://www.gnu.org/software/texinfo/>
         The spurious makeinfo call might also be the consequence of
         using a buggy 'make' (AIX, DU, IRIX), in which case you might
         want to install GNU make:
         <https://www.gnu.org/software/make/>
make[2]: *** [Makefile:9582: /tmp/root/spack-stage/spack-stage-bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/doc/bison.info] Error 127
make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/spack-build'
make[1]: *** [Makefile:10377: all-recursive] Error 1
make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-bison-3.8.2-336eticbz33uab33wkryica2zjqkptjz/spack-src/spack-build'
make: *** [Makefile:3866: all] Error 2

harshula · 2024-05-21T23:59:20Z

FYI, https://sources.debian.org/src/bison/2%3A3.8.2%2Bdfsg-1/debian/control/

Build-Depends: debhelper-compat (= 12), gettext, flex, m4 (>= 1.4-14), help2man

harshula added the build-error label May 15, 2024

harshula mentioned this issue May 15, 2024

bison: depend on texinfo #44208

Closed

alecbcs self-assigned this May 20, 2024

haampie mentioned this issue May 21, 2024

bison: add missing diffutils build dep #44296

Merged

alalazo closed this as completed in #44296 May 22, 2024

haampie mentioned this issue May 29, 2024

Installation issue: bison missing texinfo dependency #44438

Closed

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Installation issue: bison (Spack v0.22) #44207

Installation issue: bison (Spack v0.22) #44207

harshula commented May 15, 2024

harshula commented May 16, 2024

wdconinc commented May 19, 2024

alecbcs commented May 20, 2024

wdconinc commented May 20, 2024

sethrj commented May 20, 2024

harshula commented May 21, 2024

harshula commented May 21, 2024

Installation issue: bison (Spack v0.22) #44207

Installation issue: bison (Spack v0.22) #44207

Comments

harshula commented May 15, 2024

Steps to reproduce the issue

Error message

Information on your system

Additional information

General information

harshula commented May 16, 2024

wdconinc commented May 19, 2024

alecbcs commented May 20, 2024

wdconinc commented May 20, 2024

sethrj commented May 20, 2024

harshula commented May 21, 2024

harshula commented May 21, 2024