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Error in loading ISS data in quick start tutorial #2013

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rocketeer1998 opened this issue Apr 2, 2024 · 1 comment
Open

Error in loading ISS data in quick start tutorial #2013

rocketeer1998 opened this issue Apr 2, 2024 · 1 comment
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@rocketeer1998
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Because of the updating version of scikit-image, from starfish import data throws an ImportError. We need to fix three files:

  1. In site-packages\starfish\core\image\_registration\LearnTransform\translation.py, change from skimage.feature.registration_translation into skimage.registration.phase_cross_correlation
  2. In site-packages\starfish\core\morphology\Filter\min_distance_label.py, change from skimage.morphology.watershed into skimage.segmentation.watershed
  3. In site-packages\starfish\core\morphology\Segment\watershed.py, change from skimage.morphology.watershed into skimage.segmentation.watershed
@rocketeer1998 rocketeer1998 added the bug An issue with an existing feature label Apr 2, 2024
@rocketeer1998
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And why not update the corresponding arguments in the most recent release?

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