/
azure-pipelines.yml
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/
azure-pipelines.yml
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# https://aka.ms/yaml
trigger:
- master
variables:
regression: 1
jobs:
- job: build_ubuntu
displayName: Ubuntu
pool:
vmImage: 'Ubuntu-20.04'
strategy:
matrix:
avx2:
SIMD: 'AVX2'
STATIC: 1
MPI: 0
BUILD_TYPE: RelWithDebInfo
sse41:
SIMD: 'SSE4_1'
STATIC: 1
MPI: 0
BUILD_TYPE: RelWithDebInfo
sse2:
SIMD: 'SSE2'
STATIC: 1
MPI: 0
BUILD_TYPE: RelWithDebInfo
avx2_mpi:
SIMD: 'AVX2'
STATIC: 0
MPI: 1
BUILD_TYPE: RelWithDebInfo
asan:
SIMD: 'AVX2'
STATIC: 0
MPI: 0
BUILD_TYPE: ASanOpt
steps:
- checkout: self
submodules: true
- script: |
#sudo add-apt-repository ppa:ubuntu-toolchain-r/test
#sudo apt-get update
sudo apt-get install -y g++-10
condition: eq(variables['BUILD_TYPE'], 'ASanOpt')
- script: |
sudo apt-get update
sudo apt-get -y install mpi-default-dev mpi-default-bin
displayName: Install Dependencies
condition: eq(variables['MPI'], 1)
- script: |
mkdir build && cd build
if [ "${BUILD_TYPE}" = "ASanOpt" ]; then
export CC=gcc-10 ; export CXX=g++-10
fi
if [ "${STATIC}" -eq "1" ]; then
cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DBUILD_SHARED_LIBS=OFF \
-DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc \
-static-libstdc++" -DCMAKE_FIND_LIBRARY_SUFFIXES=".a" \
-DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
else
cmake -DHAVE_SANITIZER=1 -DCMAKE_BUILD_TYPE=${BUILD_TYPE} \
-DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
fi
make -j $(nproc --all)
displayName: Build MetaEuk
- script: |
cd ${BUILD_SOURCESDIRECTORY}/tests
./run.sh "${BUILD_SOURCESDIRECTORY}/build/src/metaeuk"
displayName: Run Regression Suite
condition: eq(variables['regression'], 1)
- task: PublishPipelineArtifact@0
condition: eq(variables['STATIC'], 1)
inputs:
targetPath: $(Build.SourcesDirectory)/build/src/metaeuk
artifactName: metaeuk-linux-$(SIMD)
- job: build_ubuntu_cross
displayName: Ubuntu Cross-Compile
pool:
vmImage: 'Ubuntu-20.04'
strategy:
matrix:
power8:
SIMD: POWER8
ARCH: ppc64el
CPREF: powerpc64le
power9:
SIMD: POWER9
ARCH: ppc64el
CPREF: powerpc64le
arm64:
SIMD: ARM8
ARCH: arm64
CPREF: aarch64
steps:
- script: |
sudo dpkg --add-architecture $ARCH
cat << HEREDOC | sudo tee /etc/apt/sources.list
deb [arch=amd64,i386] http://archive.ubuntu.com/ubuntu/ focal main universe multiverse
deb [arch=amd64,i386] http://archive.ubuntu.com/ubuntu/ focal-updates main universe multiverse
deb [arch=amd64,i386] http://archive.ubuntu.com/ubuntu/ focal-backports main universe multiverse
deb [arch=amd64,i386] http://security.ubuntu.com/ubuntu/ focal-security main universe multiverse
deb [arch=$ARCH] http://ports.ubuntu.com/ubuntu-ports/ focal main universe multiverse
deb [arch=$ARCH] http://ports.ubuntu.com/ubuntu-ports/ focal-updates main universe multiverse
deb [arch=$ARCH] http://ports.ubuntu.com/ubuntu-ports/ focal-backports main universe multiverse
deb [arch=$ARCH] http://ports.ubuntu.com/ubuntu-ports/ focal-security main universe multiverse
HEREDOC
sudo apt-get update
sudo apt-get -y install -o APT::Immediate-Configure=false crossbuild-essential-$ARCH zlib1g-dev:$ARCH libbz2-dev:$ARCH
displayName: Install Toolchain
- script: |
mkdir build && cd build
CC=${CPREF}-linux-gnu-gcc CXX=${CPREF}-linux-gnu-g++ \
cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DHAVE_TESTS=1 \
-DBUILD_SHARED_LIBS=OFF \
-DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc \
-static-libstdc++" -DCMAKE_FIND_LIBRARY_SUFFIXES=".a" \
-DENABLE_WERROR=1 -DHAVE_${SIMD}=1 ..
make -j $(nproc --all)
displayName: Build MetaEuk
- task: PublishPipelineArtifact@0
inputs:
targetPath: $(Build.SourcesDirectory)/build/src/metaeuk
artifactName: metaeuk-linux-$(SIMD)
- job: build_macos
displayName: macOS
pool:
vmImage: 'macos-11'
steps:
- checkout: self
submodules: true
- script: |
cd ${BUILD_SOURCESDIRECTORY}
./lib/mmseqs/util/build_osx.sh . build metaeuk
displayName: Build MetaEuk
- script: |
cd ${BUILD_SOURCESDIRECTORY}/tests
./run.sh "${BUILD_SOURCESDIRECTORY}/build/metaeuk"
displayName: Run Regression Suite
condition: eq(variables['regression'], 1)
- task: PublishPipelineArtifact@0
inputs:
targetPath: $(Build.SourcesDirectory)/build/metaeuk
artifactName: metaeuk-darwin-universal
- job: upload_artifacts
displayName: Upload Artifacts
condition: and(succeeded(), ne(variables['Build.Reason'], 'PullRequest'))
pool:
vmImage: 'ubuntu-latest'
dependsOn:
- build_macos
- build_ubuntu
- build_ubuntu_cross
steps:
- script: |
cd "${BUILD_SOURCESDIRECTORY}"
mkdir metaeuk
cp -f README.md LICENCE.md metaeuk
mkdir metaeuk/bin
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-darwin-universal
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-osx-universal.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-linux-SSE2
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-linux-sse2.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-linux-SSE4_1
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-linux-sse41.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-linux-AVX2
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-linux-avx2.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-linux-ARM8
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-linux-arm64.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-linux-POWER8
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-linux-ppc64le-power8.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadPipelineArtifact@1
inputs:
artifactName: metaeuk-linux-POWER9
targetPath: $(Build.SourcesDirectory)/metaeuk/bin
- script:
chmod +x "${BUILD_SOURCESDIRECTORY}/metaeuk/bin/metaeuk"
- task: ArchiveFiles@2
inputs:
rootFolderOrFile: $(Build.SourcesDirectory)/metaeuk
archiveFile: $(Build.SourcesDirectory)/metaeuk-linux-ppc64le-power9.tar.gz
includeRootFolder: true
archiveType: tar
- task: DownloadSecureFile@1
inputs:
secureFile: azure_upload_metaeuk
displayName: Get Deployment Key
- script: |
mkdir ~/.ssh && mv $DOWNLOADSECUREFILE_SECUREFILEPATH ~/.ssh/id_rsa
chmod 700 ~/.ssh && chmod 600 ~/.ssh/id_rsa
ssh-keygen -f ~/.ssh/id_rsa -y > ~/.ssh/id_rsa.pub
cd "${BUILD_SOURCESDIRECTORY}"
ssh-keygen -Y sign -f ~/.ssh/id_rsa -n file \
metaeuk-osx-universal.tar.gz \
metaeuk-linux-sse2.tar.gz \
metaeuk-linux-sse41.tar.gz \
metaeuk-linux-avx2.tar.gz \
metaeuk-linux-arm64.tar.gz \
metaeuk-linux-ppc64le-power8.tar.gz \
metaeuk-linux-ppc64le-power9.tar.gz
curl --retry 5 --retry-all-errors -X POST \
-F file[]=@metaeuk-osx-universal.tar.gz -F signature[]=@metaeuk-osx-universal.tar.gz.sig \
-F file[]=@metaeuk-linux-sse2.tar.gz -F signature[]=@metaeuk-linux-sse2.tar.gz.sig \
-F file[]=@metaeuk-linux-sse41.tar.gz -F signature[]=@metaeuk-linux-sse41.tar.gz.sig \
-F file[]=@metaeuk-linux-avx2.tar.gz -F signature[]=@metaeuk-linux-avx2.tar.gz.sig \
-F file[]=@metaeuk-linux-arm64.tar.gz -F signature[]=@metaeuk-linux-arm64.tar.gz.sig \
-F file[]=@metaeuk-linux-ppc64le-power8.tar.gz -F signature[]=@metaeuk-linux-ppc64le-power8.tar.gz.sig \
-F file[]=@metaeuk-linux-ppc64le-power9.tar.gz -F signature[]=@metaeuk-linux-ppc64le-power9.tar.gz.sig \
-F identifier="metaeuk" -F directory="${BUILD_SOURCEVERSION}" \
https://mmseqs.com/upload