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Author and PDB assigned chain identifiers #348

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ajipalar opened this issue May 5, 2023 · 1 comment
Open

Author and PDB assigned chain identifiers #348

ajipalar opened this issue May 5, 2023 · 1 comment

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@ajipalar
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ajipalar commented May 5, 2023 •
edited

The Protein Data Bank mmcif standard assigns two identifiers for protein chains, an author assigned chain id auth_asym_id and a pdb assigned chain id label_asym_id. Base on two examples of the hhblits summary list in .hhr files, hhblits appears to report the author chain id.

  • 6YWE_11
  • 7RRO_H7

It would be good to clarify this in the user guide. Perhaps it has been discussed already but I haven't seen it.
@ajipalar
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Looks like you have a tool for this - renumberpdb.pl. Does this tool come with the conda version?

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